PATH MER Indicators
0.1.0 - STU1 International flag

PATH MER Indicators, published by PATH. This is not an authorized publication; it is the continuous build for version 0.1.0). This version is based on the current content of https://github.com/PATH-Global-Health/MERindicators and changes regularly. See the Directory of published versions

Library: KenyaEMRConcepts (Experimental)

Official URL: https://path-global-health.github.io/MERindicators/Library/KenyaEMRConcepts Version: 0.1.0
Draft as of 2023-10-19 Computable Name: KenyaEMRConcepts

KenyaEMRConcepts

Related Artifacts

depends-onhttp://hl7.org/fhir/Library/FHIR-ModelInfo|4.0.1
depends-onhttp://hl7.org/fhir/Library/FHIRHelpers|4.0.1
depends-onFHIRCommon (version 4.0.1)
depends-onSNOMED CT (all versions)
depends-onLogical Observation Identifiers, Names and Codes (LOINC)
depends-onRxNorm
depends-onCIEL
depends-onhttps://openhie.org
depends-onAdministrativeGender
depends-onhttps://path-global-health.github.io/MERindicators/ValueSet/AgeRangesTXCURR
depends-onhttps://path-global-health.github.io/MERindicators/ValueSet/ViralLoadTest
depends-onSynthea HIV MedicationsVS
depends-onCIELHIVMedications

Contents

text/cql

library KenyaEMRConcepts version '0.1.0'

using FHIR version '4.0.1'

include FHIRHelpers version '4.0.1'
include FHIRCommon version '4.0.1' called FC

// codesystems
codesystem "SNOMED-CT": 'http://snomed.info/sct'
codesystem "LOINC": 'http://loinc.org'
codesystem "RxNorm": 'http://www.nlm.nih.gov/research/umls/rxnorm'

// local codesystems
codesystem "CIEL": 'https://openconceptlab.org/orgs/CIEL/sources/CIEL'
codesystem "OpenHIE": 'https://openhie.org'

// FHIR CS and VS
valueset "HL7 Administrative Gender": 'http://hl7.org/fhir/ValueSet/administrative-gender'

code "HIV Positive": '165816005' from "SNOMED-CT" display 'HIV Positive'

// codes

// The display "Pregnancy (finding)" is not a valid display for the code {http://snomed.info/sct}77386006
code "Pregnancy (finding)": '77386006' from "SNOMED-CT" display 'Pregnancy (finding)'
code "Pregnant": '146789000' from "SNOMED-CT" display 'Pregnant'
// code "Breastfeeding": '169750002' from "SNOMED-CT" display 'Breastfeeding'
code "Prenatal initial visit (regime/therapy)": '424441002' from "SNOMED-CT" display 'Prenatal initial visit (regime/therapy)'
code "Pregnancy status - Reported": '11449-6' from "LOINC" display 'Pregnancy status - Reported'
// code "Livebirth (finding)": '281050002' from "SNOMED-CT" display 'Livebirth (finding)'
// code "Postpartum state (finding)": '86569001' from "SNOMED-CT" display 'Postpartum state (finding)'
// code "Normal breast feeding (finding)": '69840006' from "SNOMED-CT" display 'Normal breast feeding (finding)'


// ciel hiv/other
code "Currently taking ARV": '160119' from "CIEL" display 'Currently taking ARV'
code "Coded Answer": '1065' from "CIEL" display 'Yes'
code "Method of enrollment": '160540' from "CIEL" display 'Method of enrollment'
code "Outpatient department": '160542' from "CIEL" display 'Outpatient department'
code "Outpatient department SNOMED": '33022008' from "SNOMED-CT" display 'Outpatient department'
code "CURRENT DRUGS USED": '1193' from "CIEL" display 'CURRENT DRUGS USED'
code "RETURN VISIT DATE": '5096' from "CIEL" display 'RETURN VISIT DATE'


// snomed and other hiv testing, results, conditions, art
code "Acquired immune deficiency syndrome (disorder)": '62479008' from "SNOMED-CT" display 'Acquired immune deficiency syndrome (disorder)'
code "HIV Condition Positive": '86406008' from "SNOMED-CT" display 'HIV infection'
code "HIV Negative": '165815009' from "SNOMED-CT" display 'HIV Negative'
code "History of antiretroviral therapy (situation)": '432101000124108' from "OpenHIE" display 'History of antiretroviral therapy (situation)'
code "Institutional entry point HIV treatment": '45252-4' from "LOINC" display 'Institutional entry point HIV treatment'
// code "New on ART": 'new-on-art' from "PMTCT ART Status Codes" display 'New on ART'
// need to change to valueset
code "Reason for discontinuation of program": '161555' from "CIEL" display 'Reason for discontinuation of program'
code "Treatment end date": '164384' from "CIEL" display 'Treatment end date'

// valuesets
valueset AgeRangesTXCURR: 'https://path-global-health.github.io/MERindicators/ValueSet/AgeRangesTXCURR'
// valueset "HIV Testing Services": 'https://path-global-health.github.io/MERindicators/ValueSet/HIVTestingServices' // Should use HIV tests
// viral load tests, results
// commenting out for now and the union
// valueset "Human Immunodeficiency Virus (HIV) Laboratory Test Codes (Ab and Ag)": 'urn:oid:2.16.840.1.113762.1.4.1056.50' // Used by CMS349
code "HIV 1 and 2 tests - Meaningful Use set": '75622-1' from "LOINC" display 'HIV 1 and 2 tests - Meaningful Use set'
valueset "Viral Load Test": 'https://path-global-health.github.io/MERindicators/ValueSet/ViralLoadTest'
// valueset "Synthea HIV Medications": 'https://path-global-health.github.io/MERindicators/ValueSet/SyntheaHIVMedications'
valueset "ART Medications": 'https://path-global-health.github.io/MERindicators/ValueSet/SyntheaHIVMedications'
valueset "CIELHIVMedications": 'https://path-global-health.github.io/MERindicators/ValueSet/CIELHIVMedications'
// valueset "EnrollmentMethods":

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